Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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PRJNA251785

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Hybrid short+long WGS of grass plant achieving A-grade (98/100) with Q30 at 89.4% (measured) as the marginal limiting metric. Long-read mean length (251 bp) and minimal duplication (1.09%) enable superior scaffolding and assembly—hybrid approach leverages strengths of both chemistries for plant genome recovery.

Data type / assay
WGS
Organism
Panicum hallii var. hallii
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
70 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 438480502886 reported
total reads 818389611 reported
n content pct 0.005 measured
pct q20 bases 95.1 measured
pct q30 bases 89.4 measured
gc content pct 45.5 measured
mean read length 251 measured
mean base quality 33.9 measured
adapter content pct 0.18 measured
duplication rate pct 1.09 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.4 measured ×1 97%
duplication rate pct 1.09 measured ×0.5 100%
adapter content pct 0.18 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0