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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
48/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
pig gut metagenome
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
44 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
469295930
reported
total reads
834633
reported
n content pct
0.03
measured
pct q20 bases
88
measured
pct q30 bases
74.3
measured
gc content pct
52.7
measured
mean read length
520.6
measured
mean base quality
33.7
measured
adapter content pct
0
measured
duplication rate pct
96.99
measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 48/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
74.3
measured
×1
22%
adapter content pct
0
measured
×0.5
100%
QC cost
3 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0