PRJNA261945

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

WGS on MiSeq for Pseudomonas sp. H2 (environmental isolate) achieving good quality (89.9% Q20, 81.1% Q30) with high GC content (62.3%). Dataset enables single-strain genome assembly, metabolic pathway inference, and characterization of environmental Pseudomonas diversity.

Data type / assay

WGS

Organism

Pseudomonas sp. H2

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

16 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5494420288 reported

total reads 9126944 reported

n content pct 0 measured

pct q20 bases 89.9 measured

pct q30 bases 81.1 measured

gc content pct 62.3 measured

mean read length 301 measured

mean base quality 32.9 measured

adapter content pct 4.79 measured

duplication rate pct 1.23 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.1 measured ×1 56%

duplication rate pct 1.23 measured ×0.5 100%

adapter content pct 4.79 measured ×0.4 73%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0