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Provenance — who produced it, who reused it
Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
80/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
654 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1927357060499
reported
total reads
3621489768
reported
mean coverage
621.7
extrapolated
n content pct
0.001
measured
pct q20 bases
91.6
measured
pct q30 bases
85.9
measured
gc content pct
40.4
measured
mean read length
125
measured
mean base quality
33.7
measured
adapter content pct
25.32
measured
duplication rate pct
0.88
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 80/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
621.7
extrapolated
×1.2
100%
pct q30 bases
85.9
measured
×1
80%
duplication rate pct
0.88
measured
×0.5
100%
adapter content pct
25.32
measured
×0.4
0%
QC cost
35 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0