Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA270622

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read amplicon of rat gut microbiome with perfect 100/100 despite 96.98% duplication (measured)—expected PCR amplification bias in amplicon sequencing. Outstanding Q30 (95.2%, measured) and zero adapters indicate clean amplification; high duplication is amplicon-appropriate and does not compromise abundance profiling or taxonomy inference.

Data type / assay
amplicon
Organism
rat gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2598396041 reported
total reads 10296305 reported
n content pct 0.182 measured
pct q20 bases 96.3 measured
pct q30 bases 95.2 measured
gc content pct 53.4 measured
mean read length 252.5 measured
mean base quality 36.6 measured
adapter content pct 0 measured
duplication rate pct 96.98 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.2 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 43 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0