Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA270967

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

44/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

WGS on 454 GS FLX Titanium for Apilactobacillus kunkeei offering longer individual reads than contemporary short-insert libraries but with lower per-base accuracy (85.8% Q20, 61.5% Q30). Historical platform data remains valuable for validating previous assemblies and comparing long-read technologies across bacterial genomes.

Data type / assay
WGS
Organism
Apilactobacillus kunkeei
Instrument
454 GS FLX Titanium
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 352399775 reported
total reads 996893 reported
n content pct 0.033 measured
pct q20 bases 85.8 measured
pct q30 bases 61.5 measured
gc content pct 35.9 measured
mean read length 308.7 measured
mean base quality 31 measured
adapter content pct 0 measured
duplication rate pct 11.6 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 44/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 61.5 measured ×1 0%
duplication rate pct 11.6 measured ×0.5 89%
adapter content pct 0 measured ×0.4 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0