PRJNA270969

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

WGS of bacterium with significant adapter contamination (9.85%) and marginal Q30 (83.5%), both limiting genomic inference confidence. Milder than PRJNA270961 but still requires validated adapter trimming. Moderate confidence pending preprocessing validation.

Data type / assay

WGS

Organism

Apilactobacillus kunkeei

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1803771419 reported

total reads 17134376 reported

n content pct 0.002 measured

pct q20 bases 94.5 measured

pct q30 bases 83.5 measured

gc content pct 38.7 measured

mean read length 151 measured

mean base quality 33.6 measured

adapter content pct 9.85 measured

duplication rate pct 6.54 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.5 measured ×1 68%

duplication rate pct 6.54 measured ×0.5 100%

adapter content pct 9.85 measured ×0.4 37%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0