Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA270970

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Apilactobacillus kunkeei via HiSeq 2000 with ~13.6M short reads and 83.6% Q30. This dataset supports genome assembly of this bee-associated lactic acid bacterium relevant to apiculture and bee health. The moderate read count and Q30 rate are adequate for bacterial genome finishing, though variants near low-complexity regions may require careful validation.

Data type / assay
WGS
Organism
Apilactobacillus kunkeei
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1432362345 reported
total reads 13593425 reported
n content pct 0.002 measured
pct q20 bases 94.7 measured
pct q30 bases 83.6 measured
gc content pct 38.5 measured
mean read length 151 measured
mean base quality 33.6 measured
adapter content pct 7.08 measured
duplication rate pct 6.36 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.6 measured ×1 68%
duplication rate pct 6.36 measured ×0.5 100%
adapter content pct 7.08 measured ×0.4 57%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0