Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA272452

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S rRNA amplicon sequencing of Aedes aegypti (dengue mosquito vector) microbiome via MiSeq with ~51M short reads at exceptional quality (98.5% Q30, 0% N content). This dataset enables high-confidence taxonomic profiling of arthropod-associated bacterial communities and vector competence studies. The superior quality and amplicon approach are ideal for resolving microbiota differences between wild and laboratory-reared mosquitoes.

Data type / assay
amplicon
Organism
Aedes aegypti
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
160 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10844870218 reported
total reads 50871260 reported
n content pct 0.022 measured
pct q20 bases 99.6 measured
pct q30 bases 98.5 measured
gc content pct 45.5 measured
mean read length 150.5 measured
mean base quality 37.4 measured
adapter content pct 0 measured
duplication rate pct 99.4 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.5 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0