Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA272855

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S/18S rRNA amplicon sequencing of plant-associated metagenome via MiSeq with only ~2.8M short reads at excellent quality (95% Q30, 0.002% N content). This dataset enables taxonomic profiling of fungal and bacterial endophytes or rhizosphere communities in plants. The modest read count suggests targeted single-sample sequencing or low-diversity communities, requiring verification of experimental design for accurate interpretation.

Data type / assay
amplicon
Organism
plant metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
13 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 818669730 reported
total reads 2804920 reported
n content pct 0.002 measured
pct q20 bases 95.6 measured
pct q30 bases 95 measured
gc content pct 56.1 measured
mean read length 291.8 measured
mean base quality 36.6 measured
adapter content pct 0 measured
duplication rate pct 98.48 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0