PRJNA273698

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Amplicon (human) with excellent QC (100/100, grade A). The Q30 rate of 94.7% and perfect zero adapter contamination enable precise quantification, while minimal 0.52% duplication ensures uniform template representation. Extrapolated coverage (1093×) does not undermine measured metrics; highly reusable.

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

41 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 67784792200 reported

total reads 338923961 reported

n content pct 0.004 measured

pct q20 bases 97.9 measured

pct q30 bases 94.7 measured

gc content pct 54.6 measured

mean read length 100 measured

mean base quality 36 measured

adapter content pct 0 measured

duplication rate pct 0.52 measured

mean target coverage 1093.3 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.7 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0