Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA275195

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

69/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-seq with poor base quality (Q mean: 29.5%, Q30: 83.9%, both measured) indicating library degradation. Reuse not recommended for quantitative work; posterior filtering cannot recover poor signal quality.

Data type / assay
bulk-RNA-seq
Organism
Tribolium castaneum
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
11 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 25329639591 reported
total reads 430283296 reported
n content pct 1.636 measured
pct q20 bases 87 measured
pct q30 bases 83.9 measured
gc content pct 41.2 measured
mean read length 76 measured
mean base quality 29.5 measured
adapter content pct 0.03 measured
duplication rate pct 6.19 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 69/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.9 measured ×1 70%
mean base quality 29.5 measured ×0.6 25%
adapter content pct 0.03 measured ×0.4 100%
duplication rate pct 6.19 measured ×0.4 100%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0