Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA27823

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Bacteroides finegoldii DSM 17565 via 454 GS FLX (unspecified instrument) with ~360k long reads spanning ~99 Mb. This dataset supports long-read genome assembly of an obligate anaerobic gut bacterium relevant to microbiome function and bile acid metabolism. Long-read sequencing is particularly suited for resolving repetitive prophage regions and genomic islands common in Bacteroides species.

Data type / assay
WGS
Organism
Bacteroides finegoldii DSM 17565
Instrument
unspecified
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 99396789 reported
total reads 359568 reported
n content pct 0.006 measured
pct q20 bases 94.9 measured
pct q30 bases 82.9 measured
gc content pct 43.7 measured
mean read length 251 measured
mean base quality 33.4 measured
adapter content pct 0 measured
duplication rate pct 15.5 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.9 measured ×1 65%
duplication rate pct 15.5 measured ×0.5 77%
adapter content pct 0 measured ×0.4 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0