Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA278685

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Massive 16S rRNA amplicon sequencing of Streptococcus dysgalactiae via HiSeq 2500 with ~340M short reads generating unprecedented depth for this bacterial taxon, though at moderate quality (87.8% Q30). This dataset enables extremely sensitive taxonomic profiling and within-taxon microbial diversity detection, particularly useful if rare strain variants are targets. The high N content and moderate Q30 suggest filtering low-quality reads will be necessary before taxonomic assignment.

Data type / assay
amplicon
Organism
Streptococcus dysgalactiae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 67939873600 reported
total reads 339699368 reported
n content pct 0.05 measured
pct q20 bases 93 measured
pct q30 bases 87.8 measured
gc content pct 52.7 measured
mean read length 100 measured
mean base quality 34.7 measured
adapter content pct 0.02 measured
duplication rate pct 88.03 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.8 measured ×1 89%
adapter content pct 0.02 measured ×0.5 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0