Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA279031

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon sequencing of human gut metagenome with catastrophic 93.57% adapter contamination, rendering data largely unusable despite exceptional base quality (Q30 94.9%, mean 36.6). Severe library preparation failure evident. Extensive preprocessing required before reuse is feasible.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
100 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4522055400 reported
total reads 7536759 reported
n content pct 0 measured
pct q20 bases 98.5 measured
pct q30 bases 94.9 measured
gc content pct 51.2 measured
mean read length 300 measured
mean base quality 36.6 measured
adapter content pct 93.57 measured
duplication rate pct 96.78 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.9 measured ×1 100%
adapter content pct 93.57 measured ×0.5 0%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0