Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA279780

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:opus

This is high-throughput bulk RNA-seq from the Asian longhorned beetle (Anoplophora glabripennis) on an Illumina HiSeq 2000, and it earns a well-supported A (95/100): every metric that actually drove the score was directly measured (evidence_strength = 1), so this is a firm reading rather than a provisional one pending deeper analysis. The grade is anchored by excellent base accuracy — 96.2% of bases at Q30 and a mean base quality of 37 — meaning the underlying reads are trustworthy for sensitive applications like variant calling and accurate transcript quantification. The one real drag is a 43.12% duplication rate (scored 71/100), which is common in RNA-seq from highly expressed transcripts and PCR amplification but does inflate apparent read depth, so you should deduplicate or account for library complexity before treating coverage as effective depth. With low adapter (2.11%) and negligible N content, the dataset is clean and reusable; just enter it expecting that a meaningful fraction of reads are redundant.

Data type / assay
bulk-RNA-seq
Organism
Anoplophora glabripennis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 21045777480 reported
total reads 114740277 reported
n content pct 0.063 measured
pct q20 bases 98.5 measured
pct q30 bases 96.2 measured
gc content pct 42.3 measured
mean read length 105 measured
mean base quality 37 measured
adapter content pct 2.11 measured
duplication rate pct 43.12 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%
mean base quality 37 measured ×0.6 100%
adapter content pct 2.11 measured ×0.4 99%
duplication rate pct 43.12 measured ×0.4 71%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 84