Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJNA279923

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

55/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome shotgun sequencing of groundwater metagenome via MiSeq with ~53M short reads at moderate quality (81% Q30, 0% N content). This dataset captures metagenomic diversity from subsurface environments, supporting metabolic reconstruction of anaerobic microbial communities and detection of rare organisms. The moderate quality and read depth are adequate for taxonomic profiling and gene family annotation.

Data type / assay
WGS
Organism
groundwater metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 31920246932 reported
total reads 53023666 reported
n content pct 0 measured
pct q20 bases 84.7 measured
pct q30 bases 81 measured
gc content pct 44.2 measured
mean read length 301 measured
mean base quality 31.6 measured
adapter content pct 68.25 measured
duplication rate pct 0.21 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 55/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81 measured ×1 55%
duplication rate pct 0.21 measured ×0.5 100%
adapter content pct 68.25 measured ×0.4 0%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0