Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA280362

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mus musculus amplicon sequencing with excellent measured quality (A grade). Q30 at 95.1% and base quality of 37 are outstanding. Adapter content of 1.93% is the only minor concern. Mean target coverage reported as 51× (extrapolated); recommend measured coverage validation before scaling to production.

Data type / assay
amplicon
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
60 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2755233742 reported
total reads 5492193 reported
n content pct 0 measured
pct q20 bases 96.7 measured
pct q30 bases 95.1 measured
gc content pct 39.3 measured
mean read length 250.9 measured
mean base quality 37 measured
adapter content pct 1.93 measured
duplication rate pct 86.98 measured
mean target coverage 51 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%
adapter content pct 1.93 measured ×0.5 93%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0