Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA287262

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse targeted amplicon with inadequate base quality. Failed QC (47/100, F) with Q30 of 74.1%, well below the standard for accurate variant calling in amplicons, combined with high duplication (89.8%); both metrics indicate poor performance for mutation detection. Not recommended for reuse without evidence of raw data quality improvement.

Data type / assay
amplicon
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
24 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1052738500 reported
total reads 4210954 reported
n content pct 0.028 measured
pct q20 bases 80 measured
pct q30 bases 74.1 measured
gc content pct 53 measured
mean read length 250 measured
mean base quality 30.4 measured
adapter content pct 0 measured
duplication rate pct 89.8 measured
mean target coverage 19.5 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 74.1 measured ×1 21%
adapter content pct 0 measured ×0.5 100%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0