PRJNA290784

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

7 further papers cite this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Escherichia coli

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

198 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 189215838725 reported

total reads 636626739 reported

mean coverage 41133.9 extrapolated

n content pct 0.001 measured

pct q20 bases 95.4 measured

pct q30 bases 92 measured

gc content pct 50.2 measured

mean read length 148.7 measured

mean base quality 34.1 measured

adapter content pct 0 measured

duplication rate pct 24.13 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 41133.9 extrapolated ×1.2 100%

pct q30 bases 92 measured ×1 100%

duplication rate pct 24.13 measured ×0.5 50%

adapter content pct 0 measured ×0.4 100%

QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0