Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

PRJNA295255

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Small-scale miRNA-seq of Musa acuminata (banana) via HiSeq 2000 with ~33M short reads at exceptional quality (97.7% Q30 bases). This dataset enables microRNA discovery and quantification in a crop plant, useful for understanding post-transcriptional gene regulation in fruit development or stress responses. The small read size and high quality are appropriate for mature miRNA characterization, though questions about precursor variants may require supplementary data.

Data type / assay
bulk-RNA-seq
Organism
Musa acuminata AAA Group
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1657468300 reported
total reads 33149366 reported
n content pct 0.011 measured
pct q20 bases 99.3 measured
pct q30 bases 97.7 measured
gc content pct 54 measured
mean read length 50 measured
mean base quality 38.8 measured
adapter content pct 97.79 measured
duplication rate pct 83.2 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.7 measured ×1 100%
mean base quality 38.8 measured ×0.6 100%
adapter content pct 97.79 measured ×0.4 0%
duplication rate pct 83.2 measured ×0.4 0%
QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0