Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA296666

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Extreme-scale whole-genome sequencing of Columbicola adamsi (a parasitic louse) via HiSeq 2500 with ~2.3B short reads and 93.6% Q30, generating exceptional depth for a single organism. This dataset enables comprehensive genomic characterization of a bird ectoparasite relevant to host-parasite coevolution and microbiome studies. The enormous read count supports ultra-sensitive variant detection and structural variant discovery in this arthropod.

Data type / assay
WGS
Organism
Columbicola adamsi
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
61 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 738135493440 reported
total reads 2306673417 reported
n content pct 0.026 measured
pct q20 bases 95.9 measured
pct q30 bases 93.6 measured
gc content pct 37.8 measured
mean read length 160 measured
mean base quality 37.5 measured
adapter content pct 8.44 measured
duplication rate pct 17.85 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.6 measured ×1 100%
duplication rate pct 17.85 measured ×0.5 69%
adapter content pct 8.44 measured ×0.4 47%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0