Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA296810

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S rRNA amplicon sequencing of mouse gut metagenome via 454 GS FLX Titanium long-read platform with ~226k reads at moderate quality (65.2% Q30). This dataset enables long-read amplicon profiling of murine intestinal microbiota, particularly useful for resolving full-length 16S rRNA sequences for improved species-level taxonomy. The modest read count and long-read format suggest this may represent a single sample or low-diversity communities.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
15 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 81101939 reported
total reads 226596 reported
n content pct 0.018 measured
pct q20 bases 85.4 measured
pct q30 bases 65.2 measured
gc content pct 55.7 measured
mean read length 367.4 measured
mean base quality 31.2 measured
adapter content pct 0 measured
duplication rate pct 93.97 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 65.2 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0