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Provenance — who produced it, who reused it
Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
35/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Populus tremula
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
95 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1403676987556
reported
total reads
6990857572
reported
n content pct
0.006
measured
pct q20 bases
84.9
measured
pct q30 bases
78.1
measured
gc content pct
39.2
measured
mean read length
101
measured
mean base quality
31.4
measured
adapter content pct
11.51
measured
duplication rate pct
29.96
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 35/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
78.1
measured
×1
41%
duplication rate pct
29.96
measured
×0.5
31%
adapter content pct
11.51
measured
×0.4
25%
QC cost
24 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0