Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

PRJNA297632

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

69/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Extensive whole-genome sequencing of Acinonyx jubatus (cheetah) via HiSeq 2000 with ~1.96B reads at moderate quality (78.4% Q30). This dataset enables genomic characterization of an endangered large felid relevant to conservation genetics and evolutionary biology. The enormous read count supports ultra-deep variant discovery, structural variant mapping, and detection of population-level genetic diversity despite lower base quality.

Data type / assay
WGS
Organism
Acinonyx jubatus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
28 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 292602238403 reported
total reads 1962696979 reported
n content pct 0.057 measured
pct q20 bases 87.5 measured
pct q30 bases 78.4 measured
gc content pct 42.5 measured
mean read length 100 measured
mean base quality 30.9 measured
adapter content pct 0.04 measured
duplication rate pct 0.94 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 69/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 78.4 measured ×1 42%
duplication rate pct 0.94 measured ×0.5 100%
adapter content pct 0.04 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0