Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA30007

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

60/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Bacteroides cellulosilyticus DSM 14838 using 454 GS FLX long-read technology, generating ~315k reads spanning ~79 Mb. This dataset enables long-read-based genome assembly of a cellulose-degrading anaerobic bacterium, particularly valuable for resolving repetitive regions and large structural elements. Long-read sequencing is well-suited for obtaining complete circular genomes in this organism relevant to biomass degradation and anaerobic biotechnology.

Data type / assay
WGS
Organism
Parabacteroides johnsonii DSM 18315
Instrument
454 GS FLX
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 79391915 reported
total reads 315228 reported
n content pct 0.009 measured
pct q20 bases 95.8 measured
pct q30 bases 84.8 measured
gc content pct 47.4 measured
mean read length 245.1 measured
mean base quality 33.9 measured
adapter content pct 0 measured
duplication rate pct 47.44 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 60/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.8 measured ×1 74%
duplication rate pct 47.44 measured ×0.5 0%
adapter content pct 0 measured ×0.4 100%
QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0