Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA30027

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Bacteroides cellulosilyticus DSM 14838 via 454 GS FLX long-read technology with ~466k reads spanning ~113 Mb. This dataset supports long-read genome assembly of a cellulose-degrading anaerobic bacterium with relevance to biomass biotechnology. The long-read format is particularly valuable for resolving repetitive carbohydrate utilization loci and obtaining complete circular genomes in this organism.

Data type / assay
WGS
Organism
Bacteroides cellulosilyticus DSM 14838
Instrument
454 GS FLX
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 112615867 reported
total reads 466253 reported
n content pct 0.008 measured
pct q20 bases 96.1 measured
pct q30 bases 86.5 measured
gc content pct 43.7 measured
mean read length 239.1 measured
mean base quality 34.2 measured
adapter content pct 0 measured
duplication rate pct 28.81 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.5 measured ×1 83%
duplication rate pct 28.81 measured ×0.5 35%
adapter content pct 0 measured ×0.4 100%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0