Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA300864

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

36/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Venezuelan equine encephalitis virus via Ion Torrent PGM with ~120M short reads at moderate quality (66.1% Q30, 0% N content). This dataset captures viral transcriptomics during infection in mammalian hosts or cultured cells, relevant to understanding pathogenesis and antiviral responses. The substantial read depth despite moderate quality supports detection of viral transcripts and host response genes.

Data type / assay
bulk-RNA-seq
Organism
Venezuelan equine encephalitis virus
Instrument
Ion Torrent PGM
Platform
ION_TORRENT
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
18 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16125384000 reported
total reads 119796685 reported
n content pct 0 measured
pct q20 bases 92 measured
pct q30 bases 66.1 measured
gc content pct 53.3 measured
mean read length 188.7 measured
mean base quality 29.5 measured
adapter content pct 0 measured
duplication rate pct 40.4 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 36/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 66.1 measured ×1 0%
mean base quality 29.5 measured ×0.6 25%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 40.4 measured ×0.4 77%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0