PRJNA301554

BioProject

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Oryza sativa

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

475 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1729475104560 reported

total reads 16955638280 reported

n content pct 0.031 measured

pct q20 bases 98.4 measured

pct q30 bases 95.8 measured

gc content pct 44.3 measured

mean read length 51 measured

mean base quality 37.6 measured

adapter content pct 3.34 measured

duplication rate pct 59.91 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.8 measured ×1 100%

mean base quality 37.6 measured ×0.6 100%

adapter content pct 3.34 measured ×0.4 93%

duplication rate pct 59.91 measured ×0.4 34%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0