Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA301928

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Massive 16S/18S rRNA amplicon sequencing of biogas fermenter metagenome via 454 GS FLX+ long-read platform with ~877M reads across ~163 Gb, achieving exceptional coverage. This dataset enables ultra-deep taxonomic profiling of anaerobic digester microbiota critical to biogas production efficiency and methane yield. Long-read amplicons resolve full-length rRNA sequences for high-resolution taxonomy of engineered microbial ecosystems.

Data type / assay
amplicon
Organism
biogas fermenter metagenome
Instrument
454 GS FLX+
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
13 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 162558201497 reported
total reads 876665631 reported
n content pct 0.004 measured
pct q20 bases 92.8 measured
pct q30 bases 69.7 measured
gc content pct 53.6 measured
mean read length 542.7 measured
mean base quality 32.3 measured
adapter content pct 0 measured
duplication rate pct 90.33 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 69.7 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0