Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA303185

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon (Illumina MiSeq, mouse gut) with robust QC (97/100, grade A). Q30 of 89.2% and near-zero adapters (0.02%) provide clean taxonomic reads, and the 96.74% duplication—characteristic of targeted amplicon saturation—is expected. Reusable for taxonomy and community profiling if abundance methods account for saturation bias.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
126 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1954488579 reported
total reads 8017769 reported
n content pct 0 measured
pct q20 bases 96.5 measured
pct q30 bases 89.2 measured
gc content pct 49.4 measured
mean read length 245 measured
mean base quality 35.3 measured
adapter content pct 0.02 measured
duplication rate pct 96.74 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.2 measured ×1 96%
adapter content pct 0.02 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0