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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
79/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Quercus lobata
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
13 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
226424519102
reported
total reads
434175811
reported
n content pct
0.066
measured
pct q20 bases
96.2
measured
pct q30 bases
90.6
measured
gc content pct
36.2
measured
mean read length
150
measured
mean base quality
35
measured
adapter content pct
42.53
measured
duplication rate pct
1.92
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 79/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
90.6
measured
×1
100%
duplication rate pct
1.92
measured
×0.5
100%
adapter content pct
42.53
measured
×0.4
0%
QC cost
6 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0