PRJNA312830

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

58/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Freshwater metagenome WGS from an Illumina HiSeq 2000 with 602 million short reads at 75% Q30, generating 162 billion bases. The large dataset captures freshwater microbial and planktonic community diversity.

Data type / assay

WGS

Organism

freshwater metagenome

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

9 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 162627685540 reported

total reads 602101857 reported

n content pct 0.012 measured

pct q20 bases 84 measured

pct q30 bases 74.5 measured

gc content pct 46.8 measured

mean read length 101 measured

mean base quality 30.3 measured

adapter content pct 1.89 measured

duplication rate pct 0.3 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 58/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 74.5 measured ×1 23%

duplication rate pct 0.3 measured ×0.5 100%

adapter content pct 1.89 measured ×0.4 94%

QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0