Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA315559

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

454 GS amplicon sequencing of bioreactor metagenome with 188 million short reads and 48 Gb at exceptional quality (98.5% Q20, 92.6% Q30). 454 platform provides longer reads beneficial for engineered microbial community profiling despite lower modern throughput.

Data type / assay
amplicon
Organism
bioreactor metagenome
Instrument
454 GS
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
256 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 48142109064 reported
total reads 187833260 reported
n content pct 0 measured
pct q20 bases 98.5 measured
pct q30 bases 92.6 measured
gc content pct 57.3 measured
mean read length 130.2 measured
mean base quality 36 measured
adapter content pct 0 measured
duplication rate pct 95.82 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.6 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0