PRJNA316803

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Nicotiana obtusifolia

Instrument

454 GS FLX+

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 543854314 reported

total reads 1487632 reported

n content pct 0.067 measured

pct q20 bases 92 measured

pct q30 bases 80.2 measured

gc content pct 38.6 measured

mean read length 380.1 measured

mean base quality 34.9 measured

adapter content pct 0 measured

duplication rate pct 12.22 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.2 measured ×1 51%

mean base quality 34.9 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 12.22 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0