PRJNA317621

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2500 whole-genome sequencing of Alphainfluenzavirus with 119 million short reads and 31.5 Gb at high quality (95.9% Q20, 92% Q30). Supports viral population genetics, reassortment detection, and evolution tracking in influenza studies.

Data type / assay

WGS

Organism

Alphainfluenzavirus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

33 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 31530646975 reported

total reads 118918435 reported

n content pct 0.002 measured

pct q20 bases 95.9 measured

pct q30 bases 92 measured

gc content pct 45 measured

mean read length 126 measured

mean base quality 36.1 measured

adapter content pct 0.27 measured

duplication rate pct 89.74 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92 measured ×1 100%

duplication rate pct 89.74 measured ×0.5 0%

adapter content pct 0.27 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0