Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA318176

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Plant amplicon metagenome of B grade; pct_q30_bases (86.5%, measured) is solid but slightly below A-tier thresholds, and 96.5% duplication is expected and acceptable for amplicons. Good for community composition studies, though the modest Q30 may limit rare-variant detection. All metrics measured and evidence_strength=1 confirm robustness.

Data type / assay
amplicon
Organism
plant metagenome
Instrument
454 GS FLX+
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
82 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 135735961 reported
total reads 276140 reported
n content pct 0.016 measured
pct q20 bases 97.3 measured
pct q30 bases 86.5 measured
gc content pct 58.1 measured
mean read length 394 measured
mean base quality 36.1 measured
adapter content pct 0 measured
duplication rate pct 96.53 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.5 measured ×1 83%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0