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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
71/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
Bifidobacterium longum
Instrument
AB 3730xL Genetic Analyzer
Platform
CAPILLARY
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
269 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
203820667339
reported
total reads
1015044841
reported
n content pct
0.003
measured
pct q20 bases
90.1
measured
pct q30 bases
81.3
measured
gc content pct
47.7
measured
mean read length
100
measured
mean base quality
32.4
measured
adapter content pct
1.18
measured
duplication rate pct
1.85
measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 71/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
81.3
measured
×1
56%
adapter content pct
1.18
measured
×0.5
99%
QC cost
18 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0