Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA335618

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read capillary WGS with marginal quality; Grade D reflects the critically low pct_q30_bases (49.7%, measured), where less than half the bases meet stringent quality standards—this impacts accuracy for variant calling. Coverage is adequate at 29.8x but extrapolated rather than measured, and evidence_strength=0.61 indicates this reading is provisional pending deeper validation.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
AB 3730 Genetic Analyzer
Platform
CAPILLARY
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
218 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 92300300172 reported
total reads 456931776 reported
mean coverage 29.8 extrapolated
n content pct 12.379 measured
pct q20 bases 54.4 measured
pct q30 bases 49.7 measured
gc content pct 40 measured
mean read length 517 measured
mean base quality 33.7 measured
adapter content pct 0 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 29.8 extrapolated ×1.2 99%
pct q30 bases 49.7 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0