PRJNA336461

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ChIP-seq

Organism

Gossypium hirsutum

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

346 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5607829458501.001 reported

total reads 18840429852 reported

n content pct 0.001 measured

pct q20 bases 96.4 measured

pct q30 bases 91.4 measured

gc content pct 38.2 measured

mean read length 150 measured

mean base quality 38.4 measured

adapter content pct 0.04 measured

duplication rate pct 5.26 measured

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.4 measured ×1 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0