Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA342326

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Acinetobacter baumannii WGS on MiSeq generated 25.5 million 235.2 bp reads at 92.6% Q20 and 88.8% Q30 across 11.7 Gb, enabling high-resolution pathogen characterization. The 55.2% GC reflects high-GC Acinetobacter genomes; suitable for clinical surveillance, resistance-gene mapping, and outbreak-strain differentiation in hospital settings.

Data type / assay
WGS
Organism
Acinetobacter baumannii
Instrument
Illumina MiSeq
Platform
ILLUMINA
N numbers (samples, groups)
17 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 11701507871 reported
total reads 25487528 reported
n content pct 0.009 measured
pct q20 bases 92.6 measured
pct q30 bases 88.8 measured
gc content pct 55.2 measured
mean read length 235.2 measured
mean base quality 34.9 measured
adapter content pct 0 measured
duplication rate pct 9.12 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.8 measured ×1 94%
duplication rate pct 9.12 measured ×0.5 97%
adapter content pct 0 measured ×0.4 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 92