PRJNA345212

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2000 amplicon sequencing of Abbottina rivularis (gobioid fish) with 537 million short reads and 161 Gb at good quality (93.7% Q20, 87.8% Q30). Supports targeted locus analysis and population genetics in this Asian fish species.

Data type / assay

amplicon

Organism

Abbottina rivularis

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

174 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 161245430700 reported

total reads 537484769 reported

n content pct 0.002 measured

pct q20 bases 93.7 measured

pct q30 bases 87.8 measured

gc content pct 43.9 measured

mean read length 150 measured

mean base quality 34 measured

adapter content pct 2.83 measured

duplication rate pct 1.76 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.8 measured ×1 89%

adapter content pct 2.83 measured ×0.5 87%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0