Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA349809

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

MiSeq amplicon sequencing of human gut metagenome with 3.9 million short reads and 1.93 Gb at moderate quality (88.9% Q20, 84.9% Q30). Basic microbial profiling capability; lower Q-scores and modest depth limit rare-taxon detection and statistical power.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
106 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1927709500 reported
total reads 3855419 reported
n content pct 0.003 measured
pct q20 bases 88.9 measured
pct q30 bases 84.9 measured
gc content pct 50.4 measured
mean read length 250 measured
mean base quality 33.4 measured
adapter content pct 0.01 measured
duplication rate pct 96.14 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.9 measured ×1 75%
adapter content pct 0.01 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0