Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA35153

BioProject first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This exceptionally large amplicon dataset from Streptomyces coelicolor sequenced on a BGISEQ-500 platform contains over 10 billion hybrid reads generating 2 trillion bases, enabling unprecedented depth for rare-transcript detection and expression profiling in this model actinomycete. Researchers investigating antibiotic biosynthesis, secondary metabolism, or polyketide assembly will have sufficient coverage to span and resolve the large, repetitive genomic clusters characteristic of Streptomyces. The elevated 71.4% GC content accurately reflects the high-GC actinobacterial genome structure.

Data type / assay
amplicon
Organism
Streptomyces coelicolor
Instrument
BGISEQ-500
Platform
BGISEQ
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
739 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2032919825352 reported
total reads 10013543346 reported
n content pct 0.002 measured
pct q20 bases 97.1 measured
pct q30 bases 92.3 measured
gc content pct 71.4 measured
mean read length 101 measured
mean base quality 35.7 measured
adapter content pct 1.35 measured
duplication rate pct 20.47 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.3 measured ×1 100%
adapter content pct 1.35 measured ×0.5 98%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0