Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA351834

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

49/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse gut metagenome amplicon-seq on MiSeq generates 4.5 billion bases (8.1 million reads) with moderate quality (74.7% Q30 bases), suitable for microbiota composition profiling. The dataset offers reasonable depth for assessing microbial community structure and relative abundance in mouse models, a standard experimental system for host–microbiota studies.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
28 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4481493529 reported
total reads 8115438 reported
n content pct 0 measured
pct q20 bases 86.9 measured
pct q30 bases 74.7 measured
gc content pct 53.1 measured
mean read length 274.5 measured
mean base quality 32.2 measured
adapter content pct 0.02 measured
duplication rate pct 97.51 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 49/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 74.7 measured ×1 24%
adapter content pct 0.02 measured ×0.5 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0