Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA351911

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This WGS dataset of Klebsiella pneumoniae on an Illumina HiSeq 2500 platform generated 47 million reads with 93% Q30 bases, supporting complete genome assembly and clinical resistance profiling of this hospital-acquired pathogen. Researchers tracking nosocomial infection epidemiology, resistance mechanisms, or virulence evolution will benefit from reliable genome-level sequence data. The elevated 56.7% GC content is typical for Enterobacteriaceae.

Data type / assay
WGS
Organism
Klebsiella pneumoniae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
18 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 11750272000 reported
total reads 47001088 reported
n content pct 0.004 measured
pct q20 bases 96.8 measured
pct q30 bases 93 measured
gc content pct 56.7 measured
mean read length 125 measured
mean base quality 35.5 measured
adapter content pct 7.6 measured
duplication rate pct 13.41 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93 measured ×1 100%
duplication rate pct 13.41 measured ×0.5 83%
adapter content pct 7.6 measured ×0.4 53%
QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0