Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA352900

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Fungal WGS from SOLiD platform with failing grade F; pct_q30_bases (1.5%, measured) is catastrophic, with only a tiny fraction meeting quality thresholds. The unusually low GC content (1.3%, measured) and mean base quality (11.6) suggest either extreme sequencing failure or a data processing artifact. Not suitable for reuse without root-cause investigation. Full measured evidence confirms genuine quality failure.

Data type / assay
WGS
Organism
Colletotrichum higginsianum
Instrument
AB SOLiD 3 Plus System
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5477627350 reported
total reads 54811127 reported
n content pct 0 measured
pct q20 bases 32.3 measured
pct q30 bases 1.5 measured
gc content pct 1.3 measured
mean read length 51 measured
mean base quality 11.6 measured
adapter content pct 0 measured
duplication rate pct 0.01 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 1.5 measured ×1 0%
duplication rate pct 0.01 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0