PRJNA357857

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

MiSeq hybrid WGS of Bacillus anthracis with 11.5 million short and long reads and 3.72 Gb at exceptional quality (99.3% Q20, 97.5% Q30). Hybrid approach enables complete genome assembly for this dangerous pathogen in biodefense and diagnostics.

Data type / assay

WGS

Organism

Bacillus anthracis

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

hybrid (short+long)

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3718496172 reported

total reads 11510166 reported

n content pct 0.001 measured

pct q20 bases 99.3 measured

pct q30 bases 97.5 measured

gc content pct 37.6 measured

mean read length 100 measured

mean base quality 37.9 measured

adapter content pct 3.94 measured

duplication rate pct 21.01 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.5 measured ×1 100%

duplication rate pct 21.01 measured ×0.5 59%

adapter content pct 3.94 measured ×0.4 79%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0