PRJNA359887

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Saccharomyces cerevisiae

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

536 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 174194590956 reported

total reads 591027883 reported

mean coverage 14516.2 extrapolated

n content pct 0.005 measured

pct q20 bases 97.6 measured

pct q30 bases 96.4 measured

gc content pct 41.1 measured

mean read length 150 measured

mean base quality 38.1 measured

adapter content pct 40.23 measured

duplication rate pct 20.87 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 14516.2 extrapolated ×1.2 100%

pct q30 bases 96.4 measured ×1 100%

duplication rate pct 20.87 measured ×0.5 60%

adapter content pct 40.23 measured ×0.4 0%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0