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Provenance — who produced it, who reused it
Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
83/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Agastache foeniculum
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
111 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1032215564400
reported
total reads
3440718548
reported
n content pct
0.004
measured
pct q20 bases
97.1
measured
pct q30 bases
95.1
measured
gc content pct
49.2
measured
mean read length
150
measured
mean base quality
37.7
measured
adapter content pct
23.7
measured
duplication rate pct
14.46
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95.1
measured
×1
100%
mean base quality
37.7
measured
×0.6
100%
adapter content pct
23.7
measured
×0.4
0%
duplication rate pct
14.46
measured
×0.4
100%
QC cost
36 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0